重组检测软件RDP4的应用汇报人:赵烨IntroductionRDP4(binationDetectionProgramversion4)是一个检测和分析重组信号的软件,包括7种基本检测程序(RDPmethod,GENECONV,Bootscanning,MaxChi,Cimaera,3SEQandSiScan)和4种附加检测程序(LARD,PHYLPRO,distanceplotsandTOPAL)。操作基本步骤?:左击鼠标open按钮。?点击页面顶端options按钮,进入General页面选择一系列参数:?左击主界面上的X-over按钮开始进行重组分析。?分析完毕后出现四个界面,顺时针方向依次为:?Sequencedisplay?binationinformationdisplay?Schematicsequencedisplay?PlotdisplayRecordsignificantevidenceMoveaslidingwindowacrossSelectthreesequencesInformation-richCalculatesignificancewhere:Repeatwiththenext)P(1-p)binationsub-sequenceandcalculatepairwiseidentitiesMultiplesequencealignmentanddiscardallnon-informativesitessub-(=N!m!(N-m)!pNXN-mXLNm=-binant(binant)andparentalsequencesBreakpointpositions:Insequence(inalignment)binationinformationdisplay
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